Spliced read mapper for RNA-Seq data
TopHat is a fast splice junction mapper for nucleotide sequence reads produced by the RNA-Seq method. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/h8z7diqw1cdnx0zbyrdbxlp59p31p9qh-tophat-2.1.1.drv | ||
x86_64-linux | x86_64-w64-mingw32 | /gnu/store/s1kzwlrhr5jgcs16fp704n4xslyss57x-tophat-2.1.1.drv | |
x86_64-linux | riscv64-linux-gnu | /gnu/store/kgnix3vgqliinkryxilqnij2y7vf3prs-tophat-2.1.1.drv | |
x86_64-linux | powerpc-linux-gnu | /gnu/store/6h75ixqk8zf9682w3d9wwjdbyqm5cmvr-tophat-2.1.1.drv | |
x86_64-linux | powerpc64le-linux-gnu | /gnu/store/zw6gvfwwg287m1dhfxkn9sk8jddzrgay-tophat-2.1.1.drv | |
x86_64-linux | mips64el-linux-gnu | /gnu/store/lvkvqr1zx69x4a33vpvb6fq22y23nsm2-tophat-2.1.1.drv | |
x86_64-linux | i686-w64-mingw32 | /gnu/store/sj9dh7ry1d6yf7wgli6bq1ik7f0vyhzj-tophat-2.1.1.drv | |
x86_64-linux | i586-pc-gnu | /gnu/store/ypfyc04n37gz7vcxd8n49zahrjln9ll1-tophat-2.1.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/irdzra5z44ilm0dhr1k8jd9401kyvvz2-tophat-2.1.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/j5r2sfgq6xnx1ap6yrv5y3b08009mi0n-tophat-2.1.1.drv |
Linter | Message | Location |
---|---|---|
input-labels Identify input labels that do not match package names | label 'gcc@5' does not match package name 'gcc' | |
input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python2' |