Tool for fast counting of k-mers in DNA
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. Jellyfish is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in a binary format, which can be translated into a human-readable text format using the jellyfish dump
command, or queried for specific k-mers with jellyfish query
.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/j60262881f2xi1c4a7jrin5jgx8npnck-jellyfish-2.3.0.drv | ||
x86_64-linux | aarch64-linux-gnu | /gnu/store/ipcb44dx8vgpn1vbg8qbc917h88bkm13-jellyfish-2.3.0.drv | |
powerpc64le-linux | /gnu/store/gsd57a9xsc71fy9619n49ddc3zpx9zcb-jellyfish-2.3.0.drv | ||
mips64el-linux | /gnu/store/xl0riq7k508lqp8a122ph8bjzspzg2wy-jellyfish-2.3.0.drv | ||
i686-linux | /gnu/store/qxk9ilrqk5c4s7fnd8k56nbl0bc0xci2-jellyfish-2.3.0.drv | ||
i586-gnu | /gnu/store/qham03k1c3hycvbmvdvsbqr5ydpk0qdv-jellyfish-2.3.0.drv | ||
armhf-linux | /gnu/store/jmy8q0fp6gvlpqw5pgnkgvi47f4apmx0-jellyfish-2.3.0.drv | ||
aarch64-linux | /gnu/store/f4lx3bkn6ww1a5jwjyxl5hcjv30hshx6-jellyfish-2.3.0.drv |
Linter | Message | Location |
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formatting Look for formatting issues in the source | line 4751 is way too long (92 characters) |