Spliced read mapper for RNA-Seq data
TopHat is a fast splice junction mapper for nucleotide sequence reads produced by the RNA-Seq method. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/wxc45bw6gp6as1wdi49fvh3ah2akmm86-tophat-2.1.1.drv | ||
x86_64-linux | x86_64-w64-mingw32 | /gnu/store/fk1m0gwz9jxgszapwbz1nczzd6cgql9w-tophat-2.1.1.drv | |
x86_64-linux | riscv64-linux-gnu | /gnu/store/mqlqwzif2ahkck2vcsqjg9bzl0hxph2d-tophat-2.1.1.drv | |
x86_64-linux | powerpc-linux-gnu | /gnu/store/y4gvk0k6d7zr0cmq0f3bx3rwajkrn176-tophat-2.1.1.drv | |
x86_64-linux | powerpc64le-linux-gnu | /gnu/store/q7skcp0nfc0ml141a8bfmgqjn6xpkyq7-tophat-2.1.1.drv | |
x86_64-linux | mips64el-linux-gnu | /gnu/store/vfk0grsx1cb7cr15z6i86cvsjk3sybhl-tophat-2.1.1.drv | |
x86_64-linux | i686-w64-mingw32 | /gnu/store/3pqslx93ivva10j73wbdgxwjag7c8cla-tophat-2.1.1.drv | |
x86_64-linux | i586-pc-gnu | /gnu/store/y6l2sx5sqj8f2qnx34nshf1w3b3hv7mb-tophat-2.1.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/2yidwnsa6l66ig22j4f6ihblv5l5l14s-tophat-2.1.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/b8x90j89znyns7zy7h2yd3ppxnp9ln80-tophat-2.1.1.drv |
Linter | Message | Location |
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input-labels Identify input labels that do not match package names | label 'gcc@5' does not match package name 'gcc' | |
input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python2' |