Tool for fast counting of k-mers in DNA
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. Jellyfish is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in a binary format, which can be translated into a human-readable text format using the jellyfish dump command, or queried for specific k-mers with jellyfish query.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/s7z9jp7ch1waxcp37ayfzmgdkfll8l63-jellyfish-2.3.0.drv | ||
| x86_64-linux | x86_64-w64-mingw32 | /gnu/store/5r86m0gr7aq51dzy98v5j14li6z4s63y-jellyfish-2.3.0.drv | |
| x86_64-linux | mips64el-linux-gnu | /gnu/store/xd9q9pvp38va8sfrbqgfhm9vfrw1gdm0-jellyfish-2.3.0.drv | |
| x86_64-linux | i686-w64-mingw32 | /gnu/store/ihhn0nsnvdffsfr8gry1zq6i0yck8ikb-jellyfish-2.3.0.drv | |
| x86_64-linux | aarch64-linux-gnu | /gnu/store/d19h07dcsbvsppg5qvb484dqlwyx2rp9-jellyfish-2.3.0.drv | |
| mips64el-linux | /gnu/store/h79ahmzkx393yg71w49fgpmy6bv1pjrm-jellyfish-2.3.0.drv | ||
| aarch64-linux | /gnu/store/q77n715aarvc506bkakwj027j6b7q5rb-jellyfish-2.3.0.drv |
| Linter | Message | Location |
|---|---|---|
| input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python-wrapper' | |
| formatting Look for formatting issues in the source | line 4941 is way too long (95 characters) |