Spliced read mapper for RNA-Seq data
TopHat is a fast splice junction mapper for nucleotide sequence reads produced by the RNA-Seq method. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/i23fdrzh49vhx8lqb4g2mfwql88lbvq7-tophat-2.1.1.drv | ||
x86_64-linux | x86_64-w64-mingw32 | /gnu/store/5hg8bz27n0bh4rf7nnkg6sxhsmbj4984-tophat-2.1.1.drv | |
x86_64-linux | riscv64-linux-gnu | /gnu/store/svl4kw77ivrgsz48fwa6f2cxrc7jk33m-tophat-2.1.1.drv | |
x86_64-linux | powerpc-linux-gnu | /gnu/store/xxb6d8hq232vxp60by6kmaq5x0dkidkq-tophat-2.1.1.drv | |
x86_64-linux | powerpc64le-linux-gnu | /gnu/store/kvbcr6xqvc48pci6x546k0bahj4l9mjy-tophat-2.1.1.drv | |
x86_64-linux | mips64el-linux-gnu | /gnu/store/xwjxxy4cd1xqv12fpi5xvbnfrmndsw29-tophat-2.1.1.drv | |
x86_64-linux | i686-w64-mingw32 | /gnu/store/gzbnqqs7fd859f3na2djlahqci5rlcaz-tophat-2.1.1.drv | |
x86_64-linux | i586-pc-gnu | /gnu/store/hi10k7s00w0g6d7b4445p6dy32h2f9r4-tophat-2.1.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/7zx5k70qbi8fd3z63inw96vw1c05m1a7-tophat-2.1.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/pwgdn18plm05hlwi7hy45gy1r0blyh15-tophat-2.1.1.drv |
Linter | Message | Location |
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input-labels Identify input labels that do not match package names | label 'gcc@5' does not match package name 'gcc' | |
input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python2' |