Language

Package: scregseg @ 0.1.1

Synopsis

Single-cell regulatory landscape segmentation

Description

Scregseg (Single-Cell REGulatory landscape SEGmentation) is a tool that facilitates the analysis of single cell ATAC-seq data by an HMM-based segmentation algorithm. Scregseg uses an HMM with Dirichlet-Multinomial emission probabilities to segment the genome either according to distinct relative cross-cell accessibility profiles or (after collapsing the single-cell tracks to pseudo-bulk tracks) to capture distinct cross-cluster accessibility profiles.

Home page
https://github.com/BIMSBbioinfo/scregseg
Location
gnu/packages/bioinformatics.scm (line: 15559, column: 2)
License

Lint warnings

LinterMessageLocation
No lint warnings