Deconvolution of bulk sequencing experiments using single cell data
BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples. This is a companion package to the publication "A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure." Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/zdhwhdqjajyaji1qqah7fvyjxm2cli3d-r-bseqsc-1.0-1.fef3f3e.drv | ||
| mips64el-linux | /gnu/store/mgswv2r02m4y0jx492awzj8m40h4h4m5-r-bseqsc-1.0-1.fef3f3e.drv | ||
| i686-linux | /gnu/store/7mmnrbncnrn0lq7lwqkhqi08j5p8hwvs-r-bseqsc-1.0-1.fef3f3e.drv | ||
| armhf-linux | /gnu/store/202kmfss841ld011wdjqgsx5y73adrck-r-bseqsc-1.0-1.fef3f3e.drv | ||
| aarch64-linux | /gnu/store/01y5pz2xhgp9d3vidqx7kpmma66ivxzf-r-bseqsc-1.0-1.fef3f3e.drv |
| Linter | Message | Location |
|---|---|---|
| description Validate package descriptions | sentences in description should be followed by two spaces; possible infraction at 395 | |
| derivation Report failure to compile a package to a derivation | failed to create x86_64-linux derivation: path ‘/gnu/store/0i439yy14ckkynhj1wl2gs06agdbp0af-r-rcolorbrewer-1.1-2.drv’ is not valid | |
| derivation Report failure to compile a package to a derivation | failed to create i686-linux derivation: path ‘/gnu/store/imq41gd3q2767il9gq6mqh5cv44x09rf-guile-2.2.6.drv’ is not valid | |
| derivation Report failure to compile a package to a derivation | failed to create armhf-linux derivation: path ‘/gnu/store/9wn798a6w534mnn4f28lglbjmib9n392-zlib-1.2.11.drv’ is not valid | |
| derivation Report failure to compile a package to a derivation | failed to create aarch64-linux derivation: path ‘/gnu/store/0afbxr7962z9ci6kw840n088qsmyz8lr-guile-2.2.6.drv’ is not valid | |
| derivation Report failure to compile a package to a derivation | failed to create mips64el-linux derivation: path ‘/gnu/store/aiwgcl5dppar2s8l408bshywjybsy3nd-zlib-1.2.11.drv’ is not valid |