Deconvolution of bulk sequencing experiments using single cell data
BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples. This is a companion package to the publication "A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure." Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/ma6k5aaqbbrnblxgxhdxflb06kdwiv5r-r-bseqsc-1.0-1.fef3f3e.drv | ||
mips64el-linux | /gnu/store/r0s9zjycfpyf3px7x13bwk641zkg9pg2-r-bseqsc-1.0-1.fef3f3e.drv | ||
i686-linux | /gnu/store/891za02w45w0jx6cbmdyz6hr0nyrzq39-r-bseqsc-1.0-1.fef3f3e.drv | ||
armhf-linux | /gnu/store/dmza5xxbn5msvh9pxg9ngy53wz2ldxjf-r-bseqsc-1.0-1.fef3f3e.drv | ||
aarch64-linux | /gnu/store/xic9wg8plc05b5vz84nc14q0ax9klzh6-r-bseqsc-1.0-1.fef3f3e.drv |
Linter | Message | Location |
---|---|---|
description Validate package descriptions | sentences in description should be followed by two spaces; possible infraction at 395 |