Deconvolution of bulk sequencing experiments using single cell data
BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples. This is a companion package to the publication "A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure." Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/c12v215kmc40sikfcv4wccz5cn3217gp-r-bseqsc-1.0-1.fef3f3e.drv | ||
mips64el-linux | /gnu/store/s194xi40wckiiwv9g9i1ikj3wqjwcbpz-r-bseqsc-1.0-1.fef3f3e.drv | ||
i686-linux | /gnu/store/kx3xijg5wgi65pqnhkdsxjs4di49z7xp-r-bseqsc-1.0-1.fef3f3e.drv | ||
armhf-linux | /gnu/store/1ggbim1px4525ghsl9mxid7b7pcqlvwa-r-bseqsc-1.0-1.fef3f3e.drv | ||
aarch64-linux | /gnu/store/c0vsb3hhbvi8f46l608mx8p5w0zd37sx-r-bseqsc-1.0-1.fef3f3e.drv |
Linter | Message | Location |
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description Validate package descriptions | sentences in description should be followed by two spaces; possible infraction at 395 |