Estimate gene expression levels from RNA-Seq data
RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides a user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95% credibility interval estimates for expression levels. For visualization, it can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/4jdyblmbw74q07yzr8h8cjm8n3h0j3kq-rsem-1.3.1.drv | ||
powerpc64le-linux | /gnu/store/a1gl86a3qnzv7w3kbm4wkh0d6knky2vi-rsem-1.3.1.drv | ||
mips64el-linux | /gnu/store/x404ykrq5ihd8fvcprgf93ywcc5lciss-rsem-1.3.1.drv | ||
i686-linux | /gnu/store/l0j8rndgi84kqbj8vcc97ma1ynaj28wl-rsem-1.3.1.drv | ||
i586-gnu | /gnu/store/snw5zv6gndsl50vfbl66jqc97zwlygk5-rsem-1.3.1.drv | ||
armhf-linux | /gnu/store/zf7w39201x71kpk6pz7b65lpgqdnkjw9-rsem-1.3.1.drv | ||
aarch64-linux | /gnu/store/0k1qnsy8rwdk0wiha5d2r4pnmm1v1g7x-rsem-1.3.1.drv |
Linter | Message | Location |
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wrapper-inputs Make sure 'wrap-program' can finds its interpreter. | "bash-minimal" should be in 'inputs' when 'wrap-program' is used |