Analyze, model, and explore 3C-based data
TADbit is a complete Python library to deal with all steps to analyze, model, and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/67j9nds2bz9vxv2ngrqg6wg65lwwcqnb-tadbit-1.0.1.drv | ||
| powerpc64le-linux | /gnu/store/mrgbhwdmmfza5zd61npr7h5wzdr4pczm-tadbit-1.0.1.drv | ||
| mips64el-linux | /gnu/store/86sl6l3x0f6a0q2x03wc44dnkpbirf5k-tadbit-1.0.1.drv | ||
| i686-linux | /gnu/store/j92pkdwm4adv7da4wcigz37m6iil9rxz-tadbit-1.0.1.drv | ||
| i586-gnu | /gnu/store/vf3xcpxajgdm7gd1dvhw8ply346kk193-tadbit-1.0.1.drv | ||
| armhf-linux | /gnu/store/2b6hv2l9dc6r820znn1giy086hx0ibq7-tadbit-1.0.1.drv | ||
| aarch64-linux | /gnu/store/ybyqwwjc3ldw30lna7srm56hwvngpwvb-tadbit-1.0.1.drv |
| Linter | Message | Location |
|---|---|---|
| optional-tests Make sure tests are only run when requested | the 'check' phase should respect #:tests? |