Language

Package: java-picard @ 1.113

Synopsis

Tools for manipulating high-throughput sequencing data and formats

Description

Picard is a set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats. Picard is implemented using the HTSJDK Java library to support accessing file formats that are commonly used for high-throughput sequencing data such as SAM, BAM, CRAM and VCF.

Home page
http://broadinstitute.github.io/picard/
Location
gnu/packages/bioinformatics.scm (line: 4298, column: 2)
License

Lint warnings

LinterMessageLocation
formatting

Look for formatting issues in the source

line 4322 is way too long (96 characters)
formatting

Look for formatting issues in the source

line 4323 is way too long (117 characters)
input-labels

Identify input labels that do not match package names

label 'jdk' does not match package name 'icedtea:jdk'
input-labels

Identify input labels that do not match package names

label 'java-snappy-1' does not match package name 'java-snappy'
input-labels

Identify input labels that do not match package names

label 'java-commons-jexl-2' does not match package name 'java-commons-jexl'