Quantification from RNA-seq reads using lightweight alignments
Salmon is a program to produce highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.
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| formatting Look for formatting issues in the source | line 9837 is way too long (92 characters) | |
| input-labels Identify input labels that do not match package names | label 'libstadenio-for-salmon' does not match package name 'libstadenio' |