Quantification from RNA-seq reads using lightweight alignments
Salmon is a program to produce highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/dbkz5h96yj7snzn4dxgcc8hz5x3yyk42-salmon-0.13.1.drv | ||
x86_64-linux | i586-pc-gnu | /gnu/store/x309w4vhpw06cfz8a8rayvsxsz4mkdsp-salmon-0.13.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/6g79fcx9ck6lv2ry3756y9xv791fjhgq-salmon-0.13.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/p8wbfi0k715g7zjfkzfnxc9gxx1x0lfw-salmon-0.13.1.drv | |
mips64el-linux | /gnu/store/9xxzgcm4awpp0sdp79awbq35sb65y2i7-salmon-0.13.1.drv | ||
i686-linux | /gnu/store/sfpamx59wxi9xv0j07jjck07cr1s3501-salmon-0.13.1.drv | ||
i586-gnu | /gnu/store/6bcnkn0xzw1r8yhdrhdll7x6352psa4l-salmon-0.13.1.drv | ||
armhf-linux | /gnu/store/91hhkrz5ryy44zcp9znlv616gkvld7f4-salmon-0.13.1.drv | ||
aarch64-linux | /gnu/store/slkyn0m86j3iizp2fwxxaa50yjswrmbz-salmon-0.13.1.drv |
Linter | Message | Location |
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formatting Look for formatting issues in the source | line 12232 is way too long (99 characters) |