Revision f700223c3bb7e80104c7c011edcd09479145bb26

Package: gffcompare @ 0.10.15-1.be56ef4

Synopsis

Tool for comparing or classifing transcripts of RNA-Seq

Description

gffcompare is a tool that can:

1. compare and evaluate the accuracy of RNA-Seq transcript assemblers (Cufflinks, Stringtie);

2. collapse (merge) duplicate transcripts from multiple GTF/GFF3 files (e.g. resulted from assembly of different samples);

3. classify transcripts from one or multiple GTF/GFF3 files as they relate to reference transcripts provided in a annotation file (also in GTF/GFF3 format).

Home page

https://github.com/gpertea/gffcompare/

Location

gnu/packages/bioinformatics.scm (line: 11874, column: 4)

Licenses

• Artistic License 2.0
• Expat

Derivations

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