Sensitive variant calling from sequencing data
LoFreq is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or base/indel alignment uncertainty), which are usually ignored by other methods or only used for filtering.
| Linter | Message | Location |
|---|---|---|
| input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python-wrapper' |