Spliced read mapper for RNA-Seq data
TopHat is a fast splice junction mapper for nucleotide sequence reads produced by the RNA-Seq method. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
System | Target | Derivation | Build status |
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x86_64-linux | /gnu/store/rb13kxp3661qkndm0hdi9dhj5mzljzds-tophat-2.1.1.drv | ||
x86_64-linux | x86_64-w64-mingw32 | /gnu/store/570zza55sk60p0qhrh5h2yspzqh8w9dm-tophat-2.1.1.drv | |
x86_64-linux | riscv64-linux-gnu | /gnu/store/g3x9qp8qpcj2ycqr6zs0gvp5ha4h5yci-tophat-2.1.1.drv | |
x86_64-linux | powerpc-linux-gnu | /gnu/store/sy05qfaysqhjhbkxca1l4lglg2hwa9r2-tophat-2.1.1.drv | |
x86_64-linux | powerpc64le-linux-gnu | /gnu/store/wfq882mn9b9mmgmcyc4lvmz6v026w4c1-tophat-2.1.1.drv | |
x86_64-linux | mips64el-linux-gnu | /gnu/store/v5i7pxmba6rd7agq1655l6cwk8ar0c6n-tophat-2.1.1.drv | |
x86_64-linux | i686-w64-mingw32 | /gnu/store/c102gz1nm96k5pm3hlz16krw5vqi32sk-tophat-2.1.1.drv | |
x86_64-linux | i586-pc-gnu | /gnu/store/n19fxni5y9j6vzzzc82dypb2zgrvlky7-tophat-2.1.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/mawdqw26qx27kx4nj3yzr2qy78vz1ksy-tophat-2.1.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/dngjmlwihigi6gbygs6q1vjyjbnj8zph-tophat-2.1.1.drv |
Linter | Message | Location |
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input-labels Identify input labels that do not match package names | label 'gcc@5' does not match package name 'gcc' | |
input-labels Identify input labels that do not match package names | label 'python' does not match package name 'python2' |