Map nucleotide sequence reads to reference genomes
MOSAIK is a program for mapping second and third-generation sequencing reads to a reference genome. MOSAIK can align reads generated by all the major sequencing technologies, including Illumina, Applied Biosystems SOLiD, Roche 454, Ion Torrent and Pacific BioSciences SMRT.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/bgzzl0skvrw71dklrax0js00b9vnrh2j-mosaik-2.2.30.drv | ||
| x86_64-linux | xtensa-ath9k-elf | /gnu/store/w9v7f5r4rnzwvlcp8s2cg6zg72488rpw-mosaik-2.2.30.drv | |
| x86_64-linux | x86_64-w64-mingw32 | /gnu/store/wqlzpacywficvmk746byql92ppw218np-mosaik-2.2.30.drv | |
| x86_64-linux | x86_64-linux-gnux32 | /gnu/store/w931kqnpsm1pj5hrsfsjqdz7iv9rk27m-mosaik-2.2.30.drv | |
| x86_64-linux | powerpc64-linux-gnu | /gnu/store/cp8v6giwkmrak787rgx9h745yc3b5sjb-mosaik-2.2.30.drv | |
| x86_64-linux | or1k-elf | /gnu/store/ghgz2sg68ijx847fk83scyp9dbmsnzxs-mosaik-2.2.30.drv | |
| x86_64-linux | loongarch64-linux-gnu | /gnu/store/144l62qlhz24na7mgrcjaivw6w74x8km-mosaik-2.2.30.drv | |
| x86_64-linux | i686-w64-mingw32 | /gnu/store/caws7xvd7v503l02dcq2jhmd5vv0yxc3-mosaik-2.2.30.drv | |
| x86_64-linux | avr | /gnu/store/ahrmhshk6q939p4sl9f5zmz5m3fzl4mc-mosaik-2.2.30.drv |
| Linter | Message | Location |
|---|---|---|
| compiler-for-target Check that cross-compilers are used when cross-compiling | 'CC' should be set to '(cc-for-target)' instead of 'gcc' |
|