Trinity RNA-Seq de novo transcriptome assembly
Trinity assembles transcript sequences from Illumina RNA-Seq data. Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the transcriptional complexity at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms and to tease apart transcripts derived from paralogous genes.
| System | Target | Derivation | Build status |
|---|---|---|---|
| x86_64-linux | /gnu/store/2vy8wrm18bb4zzrn51kbbmch1zr6jd9f-trinityrnaseq-2.13.2.drv |
| Linter | Message | Location |
|---|---|---|
| inputs-should-be-minimal Identify inputs that should use their minimal variant | 'cmake' should probably switched for its minimal variant | |
| wrapper-inputs Make sure 'wrap-program' can finds its interpreter. | "bash-minimal" should be in 'inputs' when 'wrap-program' is used | |
| formatting Look for formatting issues in the source | line 7269 is way too long (96 characters) | |
| formatting Look for formatting issues in the source | line 7268 is way too long (97 characters) |