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Package: miniasm @ 0.3

Synopsis

Ultrafast de novo assembly for long noisy reads

Description

Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Home page
https://github.com/lh3/miniasm
Location
gnu/packages/bioinformatics.scm (line: 12783, column: 2)
License

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