Quantification from RNA-seq reads using lightweight alignments
Salmon is a program to produce highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves its accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference.
System | Target | Derivation | Build status |
---|---|---|---|
x86_64-linux | /gnu/store/pisygjq6fmwmlwq8j3g5vsm6qld0s7yg-salmon-0.13.1.drv | ||
x86_64-linux | i586-pc-gnu | /gnu/store/b3l18a4kwhk9qbda8camqlw1m72w4nm3-salmon-0.13.1.drv | |
x86_64-linux | arm-linux-gnueabihf | /gnu/store/00g9v232vdi4j0i3c5h4g6v9jv1d3fra-salmon-0.13.1.drv | |
x86_64-linux | aarch64-linux-gnu | /gnu/store/7rmx6al79h78xza370zqnsxkr7qg8fqg-salmon-0.13.1.drv | |
mips64el-linux | /gnu/store/a3bcavzcd6v9grldk0h3g9410j88a4qv-salmon-0.13.1.drv | ||
i686-linux | /gnu/store/nmnsicwpfhagq4pc8gy5mf7liiznwhm9-salmon-0.13.1.drv | ||
i586-gnu | /gnu/store/klry8l9swz1w3p4y3la006r7dlx215ir-salmon-0.13.1.drv | ||
armhf-linux | /gnu/store/farq9i9s6ji2iqcpiaw92p1p3raca37b-salmon-0.13.1.drv | ||
aarch64-linux | /gnu/store/nzbfarvpyzib5wksckqn1lz7khj3zic0-salmon-0.13.1.drv |
Linter | Message | Location |
---|---|---|
formatting Look for formatting issues in the source | line 11620 is way too long (99 characters) |